I will list my ships and you can list yours.

Ahem,
Yaoi/Yuri/Straight:

Usui/Misaki
Phoenix/Maya
Edgeworth/Phoenix
Blackquill/Athena
Apollo/juniper
Miku/Katio
Gakupo/Luka
ririchiyo/miketsukami
Asuka/Shinji
Kyle/Cartman
tomoe/nanami
Danny/Sam
ellie/riley
AliceXJulius
chocolat/Pierre
Minato/Yukari
Yu/Yosuke
Chie/Yosuke
Naoto/kanji
izaya/shizuo
Amu/ikuto
Tamaki/Haruhi
Mirai/Akihito
Klavier/Ema
Panty/Brief
England/America
Kamina/Yuko
Kurosaki/Teru
Kei/Hikari
Lucy/Natsu....

ummmmmm....those are all the ones I can think of at the moment...